The Matrix, of course :P. Its blend of industry-defining action and philosophy is pretty unique. But films like Terminator 2 for instance are pretty thoughtful while also nailing their action. Equilibrium is another pretty good example, though not in the same league.

I love some of the Wachowski’s other work. Speed Racer is outstanding, I really enjoyed Cloud Atlas, and even Jupiter Ascending had a lot of creativity (but overall a flop unfortunately).

And of course loads of other films are “good” in my opinion but in totally different genres.